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Service Unit

Detalle de: Biocomputing and Omics Integration Facility (SBIO) at CBM

Title Biocomputing and Omics Integration Facility (SBIO) at CBM
Description

The SBIO results from the merger of two former CBM services: the Bioinformatics Service (Analysis and modelling of systems and biomolecules) and the Analysis and Integration of Omics Data facility (Biocomputational Analysis Unit). Both are now service areas of the SBIO.

The SBIO (Biocomputing and omics integration facility) centralizes multi-omics data analysis and macromolecular structure modelling into a single facility at the CBM. It is the centre's reference unit dedicated exclusively to supporting bioinformatics, computational biology and data analysis for its research groups and external entities, accompanying researchers throughout the entire data life cycle: experimental design, data analysis, integration of sources, and management and stewardship of results.

Service areas:

  • Analysis and integration of omics data: processing, statistical analysis and pipeline development for massive datasets (NGS, proteomics, lipidomics, etc.), including the integration of multi-omics data sources.
  • Analysis and modelling of systems and biomolecules: sequence analysis and phylogeny integrated with structural modelling of proteins and complexes, molecular dynamics simulations and the evaluation of interactions and mutations.
  • Analysis of microscopy data: advanced processing and quantification of image data, in coordination with the Advanced Optical Microscopy Service (SMOA).

Transversal support: advice on experimental design and technical reports for grant proposals; data management and stewardship as authorized broker for submissions to ENA and EGA; access to high-performance computing (in-house clusters and CSIC nodes such as NodoBio and DRAGO); and training courses in bioinformatics and statistical tools.

The former Bioinformatics Service originated from the Bioinformatics Unit established by Ángel Ramírez Ortiz around 2005.

Contact Email sbio@cbm.csic.es
Link Service https://www.cbm.uam.es/index.php/home/facilities/sbio/
Technical Details Computing cluster: 40 nodes, 664 cores, 8 GPUs, 60 TB data storage, ~180 GB local storage/node (CentOS). Node polifemo1: AMD Opteron 6128, 64 GB RAM, 250 GB SSD. Workstations: Intel Core2 Quad Q6600, 6 GB RAM, 250 GB disk (CentOS 7).
Institution CBM
Ontology Omics, Transcriptomics, Artificial Intelligence, Machine Learning in Biology, Genomics, High-performance Computing, Molecular evolution, Sequence analysis, Phylogenetic Analysis, Proteomics, Single-cell (scRNA-seq), Cloud Computing
Research Groups Computational biology and Bioinformatics (CBM): from Proteins to Ecosystems, Regulation of gene expression in Leishmania
Researchers David Ángel Abia Holgado, Ugo Bastolla, María Santos Galindo, Sandra González de la Fuente, María Santos Romero, Begoña Aguado Orea †, Iván Lorca Alonso, Paula Martínez García

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